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Publications
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Published:
- H. Carroll, J. K. Flanagan and S. Baniya (2005). A Trace-Driven Simulator For Palm OS Devices. In Proceedings of IEEE International Symposium on Performance Analysis of Systems and Software (ISPASS 2005), pages 157-166.
- H. Carroll, M. Clement, Q. Snell and K. Crandall (2005). Phylogenetic Analysis on Large Sequence Data Sets. In Proceedings of the Second Biotechnology and Bioinformatics Symposium (BIOT 2005) pages 20-24.
- P. Ridge*, H. Carroll*, D. Sneddon, M. Clement and Q. Snell (2006). Large Grain Size Stochastic Optimization Alignment. In Proceedings of the Sixth IEEE Symposium on BioInformatics and BioEngineering (BIBE'06) pages 127-134. (*Equally contributing authors)
- H. Carroll, P. Ridge, M. Clement and Q. Snell (2006). Effects of Gap Open and Gap Extension Penalties. In Proceedings of the Third Biotechnology and Bioinformatics Symposium (BIOT 2006) pages 19-23. (Best Student Paper Award)
- H. Carroll, P. Ridge, M. Clement and Q. Snell (2007). Phylogenies Scores for Exhaustive Maximum Likelihood and Parsimony Scores Searches. International Journal of Bioinformatics Research and Applications (IJBRA) 3(4) pages 493-503.
- H. Carroll, W. Beckstead, T. O'Connor, M. Ebbert, M. Clement, Q. Snell and D. McClellan (2007). DNA Reference Alignment Benchmarks Based on Tertiary Structure of Encoded Proteins. Bioinformatics, 23(19), pages 2648-2649.
- K. Sundberg, T. O'Connor, H. Carroll, M. Clement and Q. Snell (2007). Using parsimony to guide maximum likelihood searches. In Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, II, pages 774-779.
- H. Carroll, M. Ebbert, M. Clement and Q. Snell (2007) PSODA: Better Tasting and Less Filling Than PAUP. In Proceedings of the 4th Biotechnology and Bioinformatics Symposium, pages 74-78.
- J. L. Krein, A. R. Teichert, H. D. Carroll, M. J. Clement and Q. O. Snell (2007) PsodaScript: Applying Advanced Language Constructs to Open-source Phylogenetic Search. In Proceedings of the 4th Biotechnology and Bioinformatics Symposium, pages 89-94.
- N. Rungta, H. Carroll, E. Mercer, R. Roper, M. Clement, Q. Snell (2007). Analyzing Gene Relationships for Down Syndrome with Labeled Transitions Graphs. In Proceedings of Formal Methods in Computer Aided Design (FMCAD '07), pages 216-219.
Submitted:
- T. O'Connor, K. Sundberg, H. Carroll, M. Clement and Q. Snell (2007). Problems with Long Branch Extraction.
Posters:
- T. O'Connor, K. Sundberg, H. Carroll, Q. Snell, M. Clement (2007). Maximum likelihood search boosting via exploitation of parsimony methods. Society for Molecular Biology and Evolution.
Masters Thesis:
H. Carroll (2004). A Trace-Driven Simulator for Palm OS Devices. Brigham Young University.
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